Uses of Class
org.forester.archaeopteryx.TreePanel
Packages that use TreePanel
Package
Description
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Uses of TreePanel in org.forester.analysis
Constructors in org.forester.analysis with parameters of type TreePanelModifierConstructorDescriptionTaxonomyDataManager
(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy) TaxonomyDataManager
(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name) -
Uses of TreePanel in org.forester.archaeopteryx
Methods in org.forester.archaeopteryx that return TreePanelMethods in org.forester.archaeopteryx with parameters of type TreePanelModifier and TypeMethodDescriptionstatic final String
TreePanelUtil.createUriForSeqWeb
(PhylogenyNode node, Configuration conf, TreePanel tp) TreePanelUtil.createUrisForPdbWeb
(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel) static final void
AptxUtil.writePhylogenyToGraphicsFileNonInteractive
(File outfile, int width, int height, TreePanel tree_panel, org.forester.archaeopteryx.ControlPanel ac, AptxUtil.GraphicsExportType type, Options options) -
Uses of TreePanel in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type TreePanelModifier and TypeMethodDescriptionvoid
RenderableDomainArchitecture.render
(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) void
RenderableMsaSequence.render
(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) void
RenderablePhylogenyData.render
(float x, float y, Graphics2D g, TreePanel tree_panel, boolean to_pdf) This can be used to render phylogeny data as graphics (for example, display of the domain structure).void
RenderableVector.render
(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) -
Uses of TreePanel in org.forester.archaeopteryx.tools
Methods in org.forester.archaeopteryx.tools with parameters of type TreePanelModifier and TypeMethodDescriptionstatic final void
Blast.openNcbiBlastWeb
(String query, boolean is_nucleic_acids, JApplet applet, TreePanel p) Constructors in org.forester.archaeopteryx.tools with parameters of type TreePanelModifierConstructorDescriptionAncestralTaxonomyInferrer
(MainFrame mf, TreePanel treepanel, Phylogeny phy) ImageLoader
(TreePanel tp) SequenceDataRetriver
(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)