line |
true |
false |
branch |
66
|
0 |
12 |
if defined $fasta |
94
|
0 |
12 |
if (defined $self->{'$fasta'}) |
97
|
12 |
0 |
if ($ENV{'ALLELE_C_SILENT'}) |
100
|
0 |
12 |
if system $command |
119
|
0 |
6 |
unless open my $N_LOC, '>', $tmp_loci |
120
|
0 |
6 |
unless open my $SNP6, '<', $loci_file |
133
|
0 |
6 |
unless open my $cfh, '<', $tmp_out |
134
|
0 |
6 |
unless open my $ofh, '>', $out_file |
136
|
0 |
6 |
unless print $ofh "#CHR\tPOS\tCount_Allele_A\tCount_Allele_B\tGood_depth\n" |
139
|
6 |
6 |
if $line =~ /^#/ |
188
|
0 |
0 |
unless open my $fh, '<', $tmp_out |
190
|
0 |
0 |
if $line =~ /^#/ |
193
|
0 |
0 |
if (defined $sex_chr) { } |
194
|
0 |
0 |
if $chr ne $sex_chr |
199
|
0 |
0 |
if ($depth > 5) |
206
|
0 |
0 |
unless open my $ofh, '>', $out_file |
216
|
0 |
12 |
unless -e $path |
217
|
0 |
12 |
unless defined $path and -e $path |